If something happens and you are unable to create the files during a particular lesson, backup files we created are all found here on the image ‘DCG-UNR-RNAseq’:
/opt/rnaseq/
Download from OSF repository:
curl -L https://osf.io/365fg/download -o nema_subset_0Hour.zip
curl -L https://osf.io/9tf2g/download -o nema_subset_6Hour.zip
unzip nema_subset_0Hour.zip
unzip nema_subset_6Hour.zip
/opt/rnaseq/trim/*.qc.fq.gz
/opt/rnaseq/assembly/nema_trinity/Trinity.fasta
/opt/rnaseq/annotation/Trinity.fasta.dammit/nema_gene_name_id.csv
/opt/rnaseq/quant/*.quant